PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G028100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 257aa    MW: 26448.9 Da    PI: 5.725
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G028100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.21.5e-5542137297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdrflPianvsrimk+ lPanakisk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe yv+plk+yl +yre
  Brast03G028100.1.p  42 KEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVAPLKAYLGRYRE 132
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Brast03G028100.1.p 133 AEGEK 137
                         **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-5237166IPR009072Histone-fold
SuperFamilySSF471134.04E-3844138IPR009072Histone-fold
PfamPF008086.5E-2747111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.7E-187593No hitNo description
PROSITE patternPS0068507894IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.7E-1894112No hitNo description
PRINTSPR006156.7E-18113131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKRKSYGQQQ QQLSPEGSSP PSDNESGLAA MAAATGGESP AKEQDRFLPI ANVSRIMKRS  60
LPANAKISKE AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDLLWA MTTLGFEAYV  120
APLKAYLGRY REAEGEKAAS VLGGGGGGGT AARHGAGAGD DDANSSLGGS SGVLQIQNQN  180
QNQNQGQEGG DVGLMMGFSA VGTGAMYYGA AGSNGRRAYG GSGGEGFQRF GGGEQEENSA  240
GGGFNGGHLH HGVQWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4642132292Transcription factor HapC (Eurofung)
4g92_B2e-4642132292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1246481e-106AB124648.1 Oryza sativa Indica Group Hd5 gene for Heading date 5, complete cds, cultivar:Kasalath.
GenBankAB1246491e-106AB124649.1 Oryza sativa Indica Group Hd5 mRNA for Heading date 5, complete cds, cultivar:Kasalath.
GenBankAY0621821e-106AY062182.1 Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3b) mRNA, complete cds.
GenBankCP0126161e-106CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8377941e-106CT837794.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121O04, full insert sequence.
GenBankKR8153501e-106KR815350.1 Oryza sativa days to heading 8 (DTH8) gene, partial cds.
GenBankKR8153511e-106KR815351.1 Oryza sativa days to heading 8 (DTH8) gene, partial cds.
GenBankLC0167121e-106LC016712.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Qiu Zhao Zong.
GenBankLC0167131e-106LC016713.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Tupa 121-3.
GenBankLC0167141e-106LC016714.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Muha.
GenBankLC0167151e-106LC016715.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Basilanon.
GenBankLC0167161e-106LC016716.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Deng Pao Zhai.
GenBankLC0167181e-106LC016718.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Naba.
GenBankLC0167191e-106LC016719.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Bei Khe.
GenBankLC0167211e-106LC016721.1 Oryza sativa Indica Group Hd5 gene for heading date 5, complete cds, cultivar: Bleiyo.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571418.11e-135PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBLI1I1551e-135I1I155_BRADI; Uncharacterized protein
STRINGBRADI3G15670.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.17e-62nuclear factor Y, subunit B3